STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1815KEGG: dde:Dde_0283 hypothetical protein. (92 aa)    
Predicted Functional Partners:
DvMF_1816
KEGG: dde:Dde_0282 TPR repeat-containing protein.
  
  
 0.794
DvMF_3075
Signal transduction histidine kinase regulating citrate/malate metabolism; SMART: PAS domain containing protein; KEGG: dde:Dde_2456 putative PAS/PAC sensor protein.
  
     0.678
DvMF_1399
PFAM: Ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein.
  
     0.615
DvMF_0159
KEGG: dde:Dde_2018 HesB-like domain-containing protein.
  
     0.567
DvMF_1219
KEGG: dde:Dde_0714 transposase, putative.
  
     0.547
DvMF_2817
KEGG: dde:Dde_1000 hypothetical protein.
  
     0.530
DvMF_0625
PFAM: protein of unknown function DUF1641; KEGG: dde:Dde_0222 hypothetical protein.
  
     0.527
DvMF_0158
KEGG: dde:Dde_2018 HesB-like domain-containing protein; Contains selenocysteine; Belongs to the HesB/IscA family.
  
     0.492
DvMF_2314
PFAM: aminotransferase class IV; KEGG: dde:Dde_3619 hypothetical protein.
  
     0.452
DvMF_1756
KEGG: dde:Dde_3496 hypothetical protein.
  
     0.444
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.