STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1817KEGG: dde:Dde_0281 chemotaxis protein CheX, putative. (154 aa)    
Predicted Functional Partners:
DvMF_2010
PFAM: response regulator receiver; KEGG: dde:Dde_0384 response regulator receiver domain-containing protein.
 
 
 0.968
DvMF_2860
PFAM: response regulator receiver; KEGG: dde:Dde_0774 response regulator receiver domain-containing protein.
  
 
  0.945
DvMF_0226
PFAM: response regulator receiver; KEGG: dde:Dde_1694 response regulator receiver domain-containing protein.
   
 
  0.914
DvMF_0468
PFAM: response regulator receiver; KEGG: dde:Dde_2107 response regulator receiver domain-containing protein.
   
 
  0.905
DvMF_0775
PFAM: response regulator receiver; KEGG: dde:Dde_1576 response regulator receiver domain-containing protein.
   
 
  0.905
DvMF_2021
PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_0391 response regulator receiver (CheY-like) modulated CheW protein.
 
 
 
 0.718
DvMF_2939
PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_1493 response regulator receiver (CheY-like) modulated CheW protein.
 
 
 
 0.714
DvMF_2643
PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_3100 response regulator receiver (CheY-like) modulated CheW protein.
 
 
 
 0.713
DvMF_2755
PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase.
  
 
 0.678
DvMF_2273
KEGG: dde:Dde_0370 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
 
 0.677
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.