Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1835KEGG: sgr:SGR_4544 putative methyltransferase. (258 aa)    
Predicted Functional Partners:
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
       0.793
DvMF_1832
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dre:492779 zgc:101549 Pfam: DUF326 NeuB Phage_GPL SAF PROSITE: AFP_LIKE.
       0.784
DvMF_1834
PFAM: acylneuraminate cytidylyltransferase; KEGG: vvu:VV1_0803 CMP-N-acetylneuraminic acid synthetase.
       0.784
DvMF_1833
KEGG: ecp:ECP_3032 hypothetical protein.
  
  
 0.778
DvMF_1838
PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_0802 radical SAM domain protein.
  
  
 0.599
DvMF_2141
PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase.
  
  
 0.587
DvMF_2645
PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase.
  
  
 0.587
DvMF_1836
TIGRFAM: methyltransferase FkbM family; PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1576 glycosyl transferase family 2.
  
  
 0.574
DvMF_1837
PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH00761 putative beta-glycosyltransferase protein.
       0.531
DvMF_1839
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_0616 methyltransferase type 12.
  
  
 0.484
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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