STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1835KEGG: sgr:SGR_4544 putative methyltransferase. (258 aa)    
Predicted Functional Partners:
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
       0.794
DvMF_1832
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dre:492779 zgc:101549 Pfam: DUF326 NeuB Phage_GPL SAF PROSITE: AFP_LIKE.
       0.785
DvMF_1834
PFAM: acylneuraminate cytidylyltransferase; KEGG: vvu:VV1_0803 CMP-N-acetylneuraminic acid synthetase.
       0.785
DvMF_1833
KEGG: ecp:ECP_3032 hypothetical protein.
  
    0.779
DvMF_2141
PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase.
  
  
 0.617
DvMF_2645
PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase.
  
  
 0.617
DvMF_1838
PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_0802 radical SAM domain protein.
  
  
 0.601
DvMF_1836
TIGRFAM: methyltransferase FkbM family; PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1576 glycosyl transferase family 2.
  
    0.572
DvMF_1837
PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH00761 putative beta-glycosyltransferase protein.
       0.531
DvMF_1839
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_0616 methyltransferase type 12.
  
  
 0.490
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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