Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1838PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_0802 radical SAM domain protein. (491 aa)    
Predicted Functional Partners:
DvMF_1839
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_0616 methyltransferase type 12.
  
 0.850
DvMF_1836
TIGRFAM: methyltransferase FkbM family; PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1576 glycosyl transferase family 2.
     
 0.823
DvMF_1837
PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH00761 putative beta-glycosyltransferase protein.
  
  
 0.797
DvMF_1849
PFAM: Radical SAM domain protein; KEGG: dde:Dde_3252 elongator protein 3/MiaB/NifB.
 
   
 0.756
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
     
 0.664
DvMF_1042
KEGG: trq:TRQ2_0171 hypothetical protein.
  
 0.645
DvMF_0256
PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase.
    
 0.643
DvMF_2357
PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0557 acyl-CoA synthetase.
    
 0.643
DvMF_1005
KEGG: dde:Dde_2659 acyl carrier protein, putative.
  
 
 0.634
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.634
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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