STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1845PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dde:Dde_3256 N-acetylneuraminate synthase. (344 aa)    
Predicted Functional Partners:
DvMF_1844
PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_3257 CMP-N-acetlyneuraminic acid synthetase.
  
 0.969
DvMF_1846
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dde:Dde_3255 UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.966
DvMF_1892
KEGG: hch:HCH_05265 CMP-N-acetylneuraminic acid synthetase.
 
  
 0.907
DvMF_1834
PFAM: acylneuraminate cytidylyltransferase; KEGG: vvu:VV1_0803 CMP-N-acetylneuraminic acid synthetase.
 
  
 0.875
DvMF_1893
PFAM: acylneuraminate cytidylyltransferase; KEGG: lbl:LBL_1169 cytidylyltransferase.
 
  
 0.822
DvMF_1842
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dde:Dde_0431 putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC.
  
  
 0.553
DvMF_1848
KEGG: dde:Dde_3251 hypothetical protein.
 
     0.546
DvMF_1843
Acetyltransferase; KEGG: dde:Dde_3249 acetyltransferase.
  
  
 0.504
DvMF_0141
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_2182 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.464
DvMF_1908
TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dde:Dde_3694 glucose-1-phosphate cytidylyl-transferase.
  
  
 0.445
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.