STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1847PFAM: polysaccharide deacetylase; KEGG: dde:Dde_3250 polysaccharide deacetylase family protein. (313 aa)    
Predicted Functional Partners:
DvMF_1848
KEGG: dde:Dde_3251 hypothetical protein.
 
     0.823
DvMF_1851
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_3254 hypothetical protein.
 
     0.783
DvMF_1849
PFAM: Radical SAM domain protein; KEGG: dde:Dde_3252 elongator protein 3/MiaB/NifB.
       0.773
DvMF_1850
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: dde:Dde_3253 hypothetical protein.
     
 0.751
DvMF_0681
PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_1655 glycosyl transferase family protein.
 
  
 0.629
DvMF_0589
KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein.
  
  
 0.523
DvMF_2150
PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_3636 glycosyl transferase family protein.
  
  
 0.523
DvMF_1852
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
  
 0.466
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
     
 0.464
DvMF_1846
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dde:Dde_3255 UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.441
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.