Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1847PFAM: polysaccharide deacetylase; KEGG: dde:Dde_3250 polysaccharide deacetylase family protein. (313 aa)    
Predicted Functional Partners:
DvMF_1848
KEGG: dde:Dde_3251 hypothetical protein.
 
     0.819
DvMF_1851
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_3254 hypothetical protein.
 
     0.782
DvMF_1849
PFAM: Radical SAM domain protein; KEGG: dde:Dde_3252 elongator protein 3/MiaB/NifB.
       0.773
DvMF_1850
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: dde:Dde_3253 hypothetical protein.
     
 0.750
DvMF_1852
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
  
 0.459
DvMF_1846
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dde:Dde_3255 UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.446
DvMF_0684
TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: ppd:Ppro_2470 polysaccharide deacetylase.
 
   
 0.437
DvMF_0683
TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: ppd:Ppro_2469 hypothetical protein.
 
   
 0.424
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
  
 0.415
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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