Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1852PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: gbm:Gbem_3740 glycosyl transferase family 2. (825 aa)    
Predicted Functional Partners:
DvMF_1912
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3698 glycosyl transferase, group 2 family protein.
  
     0.748
DvMF_2700
PFAM: glycosyl transferase family 2; KEGG: glo:Glov_2749 protein of unknown function DUF268.
 
 
 
 0.748
DvMF_2150
PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_3636 glycosyl transferase family protein.
 
  
 0.734
DvMF_2704
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4087 glycosyl transferase, family 2.
  
     0.724
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
   
 
  0.535
DvMF_1850
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: dde:Dde_3253 hypothetical protein.
  
  
 0.486
DvMF_1847
PFAM: polysaccharide deacetylase; KEGG: dde:Dde_3250 polysaccharide deacetylase family protein.
  
  
 0.459
DvMF_1848
KEGG: dde:Dde_3251 hypothetical protein.
  
  
 0.447
DvMF_1851
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_3254 hypothetical protein.
  
  
 0.444
DvMF_1690
PFAM: polysaccharide export protein; KEGG: amc:MADE_03058 capsular polysaccharide transport protein, putative.
 
  
 0.441
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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