STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1867PFAM: protein of unknown function DUF162; KEGG: dde:Dde_3244 hypothetical protein. (209 aa)    
Predicted Functional Partners:
DvMF_1868
PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein.
 
 
0.996
DvMF_0396
TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: dde:Dde_1843 iron-sulfur cluster binding protein.
 
 
 0.969
DvMF_1863
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein.
 
 
 0.937
DvMF_0397
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1842 hypothetical protein.
 
 
 0.928
DvMF_1864
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.782
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
  
 0.762
DvMF_2874
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase, iron-sulfur subunit, putative.
 
 
 0.730
DvMF_0025
PFAM: protein of unknown function DUF1121; KEGG: dde:Dde_2335 hypothetical protein.
  
 
 0.728
DvMF_0325
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3528 hydrogenase, iron-sulfur cluster-binding subunit, putative.
  
 
 0.728
DvMF_1866
PFAM: DRTGG domain protein; KEGG: dde:Dde_3243 hypothetical protein.
  
  
 0.710
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.