STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1868PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein. (716 aa)    
Predicted Functional Partners:
DvMF_1867
PFAM: protein of unknown function DUF162; KEGG: dde:Dde_3244 hypothetical protein.
 
 
0.996
DvMF_0395
PFAM: protein of unknown function DUF162; KEGG: rru:Rru_A1411 protein of unknown function DUF162.
 
 
 0.994
DvMF_2895
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_1112 heterodisulfide reductase, iron-sulfur-binding subunit, putative.
  
 
 0.985
DvMF_0325
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3528 hydrogenase, iron-sulfur cluster-binding subunit, putative.
  
 
 0.951
DvMF_2196
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: dde:Dde_3604 oxidoreductase.
 
 
 0.914
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
  
 0.909
DvMF_0324
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3526 heterodisulfide reductase, A subunit.
  
 
 0.902
DvMF_2353
FAD linked oxidase domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: dde:Dde_0312 oxidoreductase.
 
 
0.902
DvMF_2894
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_1111 heterodisulfide reductase, putative.
  
 
 0.902
DvMF_0640
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 
 0.896
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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