STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1870PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein. (301 aa)    
Predicted Functional Partners:
DvMF_0528
PFAM: protein of unknown function DUF111; KEGG: cbe:Cbei_0559 hypothetical protein; Belongs to the LarC family.
 
     0.610
DvMF_1465
KEGG: dde:Dde_3008 hypothetical protein.
 
     0.561
DvMF_0527
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: wsu:WS0137 NCAIR mutase (PurE)-related protein.
 
     0.553
DvMF_1871
PFAM: Rhodanese domain protein; KEGG: dde:Dde_3248 rhodanese-like protein.
       0.430
DvMF_0239
PFAM: Radical SAM domain protein; Beta tubulin, autoregulation binding site; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1701 elongator protein 3/MiaB/NifB.
 
     0.427
DvMF_0529
PFAM: aldo/keto reductase; KEGG: mbn:Mboo_0951 aldo/keto reductase.
 
     0.417
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.