STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1879PFAM: regulatory protein LuxR; KEGG: swo:Swol_1080 ATP-dependent transcriptional regulator-like protein. (839 aa)    
Predicted Functional Partners:
DvMF_1880
TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bav:BAV1572 autotransporter.
       0.499
DvMF_0311
PFAM: heat shock protein Hsp20; KEGG: dde:Dde_2008 HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.476
DvMF_2181
PFAM: heat shock protein Hsp20; KEGG: rca:Rcas_4342 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.476
DvMF_2648
PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3092 HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.476
DvMF_2649
PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3091 HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.476
DvMF_2958
PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1343 HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.476
DvMF_2959
PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1344 HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.476
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
    
 
 0.467
DvMF_2584
KEGG: dde:Dde_1180 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; PTS system fructose subfamily IIA component; PEP-utilising protein mobile region; PEP-utilising protein domain protein; Belongs to the PEP-utilizing enzyme family.
   
  
 0.400
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.