Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
DvMF_1886PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein. (107 aa)    
Predicted Functional Partners:
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.996
DvMF_2659
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 
 0.904
DvMF_0997
PFAM: nitrogen-fixing NifU domain protein; KEGG: sat:SYN_02452 NifU-like domain protein.
  
 0.842
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.754
DvMF_2118
KEGG: dde:Dde_3773 hypothetical protein.
  
     0.648
DvMF_2389
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.637
DvMF_1005
KEGG: dde:Dde_2659 acyl carrier protein, putative.
   
 
 0.627
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.627
DvMF_0410
Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.618
DvMF_0687
TIGRFAM: capsular exopolysaccharide family; exopolysaccharide/PEPCTERM locus tyrosine autokinase; KEGG: dde:Dde_0832 protein-tyrosine kinase.
  
 0.618
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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