STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1890PFAM: iron-containing alcohol dehydrogenase; KEGG: lbl:LBL_1166 alcohol dehyodrogenase. (358 aa)    
Predicted Functional Partners:
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
    
 0.793
DvMF_1900
PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_3687 3-deoxy-manno-octulosonate cytidylyltransferase.
    
 0.743
DvMF_1433
PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3126 alcohol dehydrogenase, iron-containing.
  
   
 0.696
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
  
 0.589
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
  
 0.552
DvMF_1892
KEGG: hch:HCH_05265 CMP-N-acetylneuraminic acid synthetase.
 
     0.545
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.478
DvMF_0200
PFAM: Radical SAM domain protein; KEGG: dde:Dde_1670 radical SAM domain-containing protein.
  
  
 0.458
DvMF_1818
PFAM: Radical SAM domain protein; KEGG: dde:Dde_0278 radical SAM domain-containing protein.
  
  
 0.458
DvMF_1368
PFAM: glycoside hydrolase family 13 domain protein; KEGG: dde:Dde_2682 isoamylase protein-like.
  
  
 0.451
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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