STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1892KEGG: hch:HCH_05265 CMP-N-acetylneuraminic acid synthetase. (652 aa)    
Predicted Functional Partners:
DvMF_1893
PFAM: acylneuraminate cytidylyltransferase; KEGG: lbl:LBL_1169 cytidylyltransferase.
 
  
 0.981
DvMF_1891
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: lic:LIC12168 aspartate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.974
DvMF_1894
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: lbl:LBL_1168 N-acetylneuraminic acid (sialic acid) synthetase.
 
  
 0.971
DvMF_1845
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dde:Dde_3256 N-acetylneuraminate synthase.
 
  
 0.907
DvMF_1832
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dre:492779 zgc:101549 Pfam: DUF326 NeuB Phage_GPL SAF PROSITE: AFP_LIKE.
 
  
 0.896
DvMF_1911
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dde:Dde_3697 aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.854
DvMF_1906
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dde:Dde_3693 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-like; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.836
DvMF_0141
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_2182 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.793
DvMF_1327
KEGG: mma:MM_1125 hypothetical protein.
 
     0.778
DvMF_0682
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gur:Gura_2343 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.758
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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