Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
DvMF_1895KEGG: mag:amb0137 hypothetical protein. (560 aa)    
Predicted Functional Partners:
DvMF_1894
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: lbl:LBL_1168 N-acetylneuraminic acid (sialic acid) synthetase.
       0.508
DvMF_1892
KEGG: hch:HCH_05265 CMP-N-acetylneuraminic acid synthetase.
       0.497
DvMF_1896
PFAM: transferase hexapeptide repeat containing protein; KEGG: amu:Amuc_0639 transferase hexapeptide repeat containing protein.
       0.487
DvMF_1893
PFAM: acylneuraminate cytidylyltransferase; KEGG: lbl:LBL_1169 cytidylyltransferase.
       0.415
DvMF_1897
PFAM: polysaccharide biosynthesis protein; KEGG: dar:Daro_1251 polysaccharide biosynthesis protein.
       0.400
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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