close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1903PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_3690 HAD superfamily hydrolase. (213 aa)    
Predicted Functional Partners:
DvMF_1902
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_3689 D-isomer specific 2-hydroxyacid dehydrogenase family protein.
 
   
 0.853
DvMF_1899
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3686 NAD-dependent epimerase/dehydratase family protein.
 
    0.763
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
    0.604
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
     
 0.547
DvMF_1898
PFAM: HpcH/HpaI aldolase; KEGG: dde:Dde_3685 HPCH/HPAI aldolase family protein; Belongs to the HpcH/HpaI aldolase family.
 
     0.539
DvMF_1900
PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_3687 3-deoxy-manno-octulosonate cytidylyltransferase.
 
     0.533
DvMF_1416
KEGG: eba:ebA616 hypothetical protein.
  
     0.509
DvMF_2792
PFAM: YceI family protein; SMART: Rhodanese domain protein; KEGG: dps:DP1288 hypothetical protein; Belongs to the UPF0312 family.
 
    0.502
DvMF_1892
KEGG: hch:HCH_05265 CMP-N-acetylneuraminic acid synthetase.
 
     0.500
DvMF_1683
PFAM: protein of unknown function DUF1351; KEGG: cpy:Cphy_2989 hypothetical protein.
  
     0.497
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.