Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1905PFAM: sulfatase; KEGG: pen:PSEEN4076 hypothetical protein. (553 aa)    
Predicted Functional Partners:
DvMF_2517
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3159 flagellar basal-body rod protein, putative; Belongs to the flagella basal body rod proteins family.
    
 
 0.565
DvMF_1906
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dde:Dde_3693 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-like; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.486
DvMF_2223
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
 
   
 0.474
DvMF_2518
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3158 flagellar basal body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
 
 0.457
DvMF_0589
KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein.
  
 
 0.427
DvMF_0681
PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_1655 glycosyl transferase family protein.
  
 
 0.427
DvMF_2150
PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_3636 glycosyl transferase family protein.
  
 
 0.427
DvMF_1416
KEGG: eba:ebA616 hypothetical protein.
  
     0.404
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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