Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1925PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein. (440 aa)    
Predicted Functional Partners:
DvMF_1924
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0213 ATPase.
 
     0.823
DvMF_1199
PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 hypothetical protein.
 
     0.781
DvMF_2349
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein, putative.
  
     0.766
DvMF_2348
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative.
  
     0.751
DvMF_0588
KEGG: dde:Dde_2624 hypothetical protein.
     0.711
DvMF_0589
KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein.
 
     0.570
DvMF_1171
TIGRFAM: C_GCAxxG_C_C family protein; KEGG: amt:Amet_3720 C_GCAxxG_C_C family protein.
 
    0.539
DvMF_1922
KEGG: rxy:Rxyl_1043 hypothetical protein.
       0.474
DvMF_1923
PFAM: glycosyl transferase family 2; KEGG: reu:Reut_A2635 glycosyl transferase, family 2.
       0.474
DvMF_2327
TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase.
 
     0.411
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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