Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1941KEGG: lip:LI0201 hypothetical protein. (125 aa)    
Predicted Functional Partners:
DvMF_2822
KEGG: dde:Dde_0994 hypothetical protein.
  
     0.751
DvMF_2891
KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like.
  
     0.727
DvMF_0043
KEGG: dde:Dde_2536 hypothetical protein.
  
     0.720
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
  
     0.714
DvMF_0406
PFAM: Tetratricopeptide TPR_4; KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein.
  
     0.711
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
  
     0.699
DvMF_2495
KEGG: mgm:Mmc1_1575 hypothetical protein.
  
     0.694
DvMF_1154
PFAM: protein of unknown function DUF456; KEGG: dde:Dde_0973 hypothetical protein.
  
     0.691
DvMF_2563
PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein.
  
     0.690
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.679
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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