STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1952PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein. (543 aa)    
Predicted Functional Partners:
DvMF_2397
KEGG: dde:Dde_0264 hypothetical protein.
  
     0.713
DvMF_0206
KEGG: dde:Dde_1679 hypothetical protein.
 
     0.697
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
 
  
 0.629
DvMF_2229
KEGG: dde:Dde_0075 hypothetical protein.
 
  
 0.621
DvMF_0795
PFAM: Calcium-binding EF-hand-containing protein; KEGG: yli:YALI0A06864g hypothetical protein.
  
     0.599
DvMF_2790
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1667 TPR repeat-containing protein.
 
     0.581
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
 
     0.572
DvMF_2691
KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein.
  
  
 0.556
DvMF_2586
KEGG: dde:Dde_0639 hypothetical protein.
  
     0.546
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
 
     0.535
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.