Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1953PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein, putative. (336 aa)    
Predicted Functional Partners:
DvMF_2659
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
   
 0.976
DvMF_1955
PFAM: thiamineS protein; KEGG: dde:Dde_2458 hypothetical protein.
 
 0.958
DvMF_1954
KEGG: pth:PTH_1468 hypothetical protein.
  
 0.921
DvMF_0801
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: dde:Dde_1554 thiamine biosynthesis protein ThiS.
  
 0.911
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.839
DvMF_0872
KEGG: dde:Dde_2352 hypothetical protein.
  
 0.806
DvMF_0207
PFAM: thiamine biosynthesis protein ThiC; KEGG: dde:Dde_1680 thiamine biosynthesis protein ThiC.
  
  
 0.684
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 
 0.665
DvMF_1956
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: pth:PTH_2604 aldehyde:ferredoxin oxidoreductase.
 
   
 0.660
DvMF_1376
TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dde:Dde_2688 phosphomethylpyrimidine kinase.
  
  
 0.636
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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