Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1955PFAM: thiamineS protein; KEGG: dde:Dde_2458 hypothetical protein. (75 aa)    
Predicted Functional Partners:
DvMF_1954
KEGG: pth:PTH_1468 hypothetical protein.
 
  
 0.974
DvMF_1953
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein, putative.
 
 0.958
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 
 0.954
DvMF_0692
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_0822 hypothetical protein.
  
 0.896
DvMF_1956
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: pth:PTH_2604 aldehyde:ferredoxin oxidoreductase.
 
     0.889
DvMF_0798
TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_1557 thiamine biosynthesis protein ThiF.
  
 0.888
DvMF_0207
PFAM: thiamine biosynthesis protein ThiC; KEGG: dde:Dde_1680 thiamine biosynthesis protein ThiC.
  
  
 0.813
DvMF_1376
TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dde:Dde_2688 phosphomethylpyrimidine kinase.
  
  
 0.778
DvMF_0181
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dde:Dde_1789 phosphoadenylylsulfate reductase (thioredoxin).
  
 
 0.729
thiE
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
  
 0.701
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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