STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potASpermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (399 aa)    
Predicted Functional Partners:
DvMF_1959
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0830 ABC-type spermidine/putrescine transport system, permease component I.
 0.998
DvMF_1957
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.997
DvMF_1958
Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3672 spermidine/putrescine ABC transporter membrane protein.
 
 0.997
DvMF_2970
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01473 ABC-type spermidine/putrescine transport system, permease component I.
 0.983
DvMF_2971
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transport system, permease component II.
 
 
 0.979
DvMF_2968
PFAM: extracellular solute-binding protein family 1; KEGG: sit:TM1040_3635 extracellular solute-binding protein, family 1.
 
 
 0.973
DvMF_2969
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_01472 ABC-type spermidine/putrescine transport system, ATPase components; Belongs to the ABC transporter superfamily.
  
  
 
0.912
DvMF_1588
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmu:PM1455 AfuB.
 
  
 0.688
DvMF_2348
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative.
 
  
 0.584
DvMF_2478
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
 0.575
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.