STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1968PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein. (587 aa)    
Predicted Functional Partners:
DvMF_1550
KEGG: dde:Dde_0521 hypothetical protein.
  
     0.705
DvMF_1219
KEGG: dde:Dde_0714 transposase, putative.
  
     0.676
DvMF_1967
PFAM: UvrD/REP helicase; KEGG: dde:Dde_3571 ATP-dependent DNA helicase UvrD.
       0.658
DvMF_0902
Hypothetical protein.
  
     0.636
DvMF_1552
KEGG: dde:Dde_0524 hypothetical protein.
  
     0.622
DvMF_1756
KEGG: dde:Dde_3496 hypothetical protein.
  
     0.617
DvMF_0460
PFAM: adenylate cyclase; KEGG: dde:Dde_2101 adenylate cyclase.
  
     0.606
DvMF_0999
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein.
 
     0.600
DvMF_0356
PFAM: Tetratricopeptide TPR_4; KEGG: dde:Dde_1975 hypothetical protein.
  
     0.596
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.579
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.