Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1981PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: dde:Dde_0133 bacterioferritin. (199 aa)    
Predicted Functional Partners:
DvMF_0237
Putative CheA signal transduction histidine kinase; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Hpt domain protein; KEGG: dde:Dde_1700 CheA signal transduction histidine kinase.
  
  
 0.664
DvMF_0252
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
   
  
 0.653
DvMF_2440
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: lip:LI1167 anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
   
  
 0.653
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
     
 0.578
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_2676 ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.516
fur-2
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.501
DvMF_1982
KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.496
katA
Catalase; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.488
rimO
MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
     
 0.461
DvMF_0254
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase.
   
    0.449
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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