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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1983Phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hmo:HM1_1613 phosphoglycolate phosphatase, putative. (257 aa)    
Predicted Functional Partners:
DvMF_0148
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_2173 HAD family hydrolase.
  
  
  0.917
DvMF_0209
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_1681 D-isomer specific 2-hydroxyacid dehydrogenase family protein.
    
 0.906
DvMF_1862
PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_3239 glycolate oxidase, subunit GlcD.
    
 0.906
DvMF_2875
PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_1087 glycolate oxidase, subunit GlcD, putative.
    
 0.906
DvMF_1863
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein.
    
 0.901
DvMF_2874
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase, iron-sulfur subunit, putative.
    
 0.901
DvMF_0135
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfu:Sfum_3208 haloacid dehalogenase domain protein hydrolase.
     
  0.900
DvMF_2462
TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dde:Dde_1254 tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit.
 
      0.685
DvMF_0977
PFAM: ribulose-phosphate 3-epimerase; KEGG: dde:Dde_2632 ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
  
 0.667
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
    0.615
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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