STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1985KEGG: sfu:Sfum_0645 hypothetical protein. (239 aa)    
Predicted Functional Partners:
DvMF_1984
PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0644 protein of unknown function DUF81.
 
   
 0.952
DvMF_2103
PFAM: protein of unknown function DUF81; KEGG: tbd:Tbd_2613 hypothetical protein.
 
   
 0.785
DvMF_2342
PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0626 protein of unknown function DUF81.
 
   
 0.764
DvMF_1990
Pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase.
 
     0.737
DvMF_2104
KEGG: tbd:Tbd_2612 hypothetical protein.
  
     0.716
DvMF_1735
PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3467 hypothetical protein.
  
     0.652
DvMF_0707
PFAM: PEP-utilising protein mobile region; KEGG: sfu:Sfum_2666 pyruvate, water dikinase.
 
     0.647
DvMF_1814
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
     0.647
DvMF_1987
Pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase.
 
     0.645
DvMF_2192
PFAM: protein of unknown function DUF81; KEGG: dde:Dde_0598 hypothetical protein.
 
     0.643
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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