Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1989PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0617 integral membrane sensor signal transduction histidine kinase. (566 aa)    
Predicted Functional Partners:
DvMF_1988
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
 
   0.845
DvMF_1991
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
 
 
 0.833
DvMF_1769
PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain-containing protein.
 
   0.798
DvMF_1772
PFAM: response regulator receiver; KEGG: sfu:Sfum_0654 response regulator receiver protein.
 
 
 0.795
DvMF_2755
PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase.
 
 
 0.782
DvMF_1990
Pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase.
 
    0.763
DvMF_2334
PFAM: response regulator receiver; KEGG: dol:Dole_1358 response regulator receiver protein.
 
 0.756
DvMF_1730
Multi-sensor signal transduction histidine kinase; KEGG: dde:Dde_3465 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein.
 
 
 
 0.755
DvMF_1770
KEGG: sfu:Sfum_0655 hypothetical protein.
 
     0.733
DvMF_2346
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
  
 
   0.690
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.