Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1992PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0642 integral membrane sensor signal transduction histidine kinase. (372 aa)    
Predicted Functional Partners:
DvMF_1993
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sfu:Sfum_0643 two component, sigma54 specific, transcriptional regulator, fis family.
 
 
 0.936
DvMF_1991
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
 
 
 0.848
DvMF_2755
PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase.
 
 
 0.808
DvMF_1988
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
 
 
   0.788
DvMF_1772
PFAM: response regulator receiver; KEGG: sfu:Sfum_0654 response regulator receiver protein.
 
 
 0.780
DvMF_2334
PFAM: response regulator receiver; KEGG: dol:Dole_1358 response regulator receiver protein.
 
 
 0.763
DvMF_1769
PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain-containing protein.
  
 
   0.760
DvMF_1730
Multi-sensor signal transduction histidine kinase; KEGG: dde:Dde_3465 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein.
 
 
 
 0.734
DvMF_2543
PFAM: response regulator receiver; KEGG: lch:Lcho_0734 response regulator receiver protein.
  
 
 
 0.732
DvMF_2346
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
  
 
   0.704
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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