Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
DvMF_1995PFAM: Malate/L-lactate dehydrogenase; KEGG: mrd:Mrad2831_5976 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family. (356 aa)    
Predicted Functional Partners:
DvMF_2003
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase.
 
  
 0.946
DvMF_2004
KEGG: csa:Csal_1765 D-galactarate dehydratase/altronate hydrolase-like protein.
 
  
 0.936
DvMF_2204
Aminotransferase class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: dde:Dde_3596 L-aspartate aminotransferase.
     
 0.907
DvMF_2889
PFAM: aminotransferase class I and II; KEGG: dde:Dde_1103 aspartate aminotransferase.
     
 0.907
DvMF_0516
PFAM: aminotransferase class-III; KEGG: dps:DP0541 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.591
argD
TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: dde:Dde_1426 acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
  
 0.570
DvMF_1411
PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase.
     
 0.538
DvMF_1928
PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_0216 UDP-galactopyranose mutase.
 
     0.513
DvMF_3003
Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: rci:RRC4 putative aminotransferase.
     
  0.500
DvMF_2005
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase.
 
   
 0.487
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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