STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1999PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein. (514 aa)    
Predicted Functional Partners:
DvMF_2002
PFAM: conserved hypothetical protein; KEGG: dsy:DSY3249 hypothetical protein.
 
  
 0.935
DvMF_1998
KEGG: dsy:DSY3247 hypothetical protein.
  
  
 0.924
DvMF_2001
PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein.
  
  
 
0.900
DvMF_2000
KEGG: dsy:DSY3247 hypothetical protein.
  
  
 0.678
DvMF_2136
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pde:Pden_3481 tripartite ATP-independent periplasmic transporter, DctQ component.
  
     0.549
DvMF_1997
KEGG: mta:Moth_1926 hypothetical protein.
       0.534
DvMF_1200
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_0754 TRAP-type C4-dicarboxylate transport system periplasmic component-like.
  
     0.433
DvMF_2302
PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsq:Rsph17025_3165 hypothetical protein.
 
     0.427
DvMF_1932
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: drm:Dred_2757 TRAP dicarboxylate transporter, DctP subunit.
  
     0.412
DvMF_1995
PFAM: Malate/L-lactate dehydrogenase; KEGG: mrd:Mrad2831_5976 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
     0.401
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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