Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2007KEGG: dde:Dde_0387 hypothetical protein. (138 aa)    
Predicted Functional Partners:
DvMF_2008
KEGG: dde:Dde_0386 hypothetical protein.
       0.570
DvMF_2009
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
       0.503
DvMF_2010
PFAM: response regulator receiver; KEGG: dde:Dde_0384 response regulator receiver domain-containing protein.
       0.414
DvMF_2005
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase.
       0.410
DvMF_2006
KEGG: csa:Csal_1765 D-galactarate dehydratase/altronate hydrolase-like protein.
       0.410
DvMF_2011
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.403
DvMF_2012
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0382 flagellar synthesis regulator FleN.
       0.403
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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