STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2017TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mgm:Mmc1_1638 sulfate transporter. (730 aa)    
Predicted Functional Partners:
DvMF_2018
KEGG: dde:Dde_0388 hypothetical protein.
       0.773
DvMF_1604
KEGG: ote:Oter_0754 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
 
 0.716
DvMF_2312
PFAM: metallophosphoesterase; KEGG: dde:Dde_3623 Ser/Thr protein phosphatase family protein.
  
   0.680
DvMF_1694
KEGG: sfu:Sfum_0090 cytochrome c family protein.
    
 
 0.659
DvMF_1005
KEGG: dde:Dde_2659 acyl carrier protein, putative.
    
 
 0.591
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
 
 0.591
DvMF_1004
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_2658 short chain dehydrogenase/reductase family oxidoreductase.
   
 
 0.528
DvMF_2444
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: maq:Maqu_2513 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.528
DvMF_2858
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpt:Bpet3662 short chain dehydrogenase.
   
 
 0.528
DvMF_3100
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.528
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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