STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2022PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: gbm:Gbem_0222 transcriptional regulator, GntR family with aminotransferase domain. (593 aa)    
Predicted Functional Partners:
DvMF_1868
PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein.
    
   0.577
DvMF_2713
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU2681 iron-sulfur cluster-binding protein.
  
   0.503
DvMF_0989
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2642 iron-sulfur cluster-binding protein.
    
   0.438
DvMF_1749
PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: dde:Dde_3487 prephenate dehydratase.
     
 0.423
DvMF_0259
PFAM: protein of unknown function DUF34; KEGG: dde:Dde_1729 hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
   
    0.422
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.