Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2025KEGG: dde:Dde_0121 hypothetical protein. (554 aa)    
Predicted Functional Partners:
DvMF_2851
Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; KEGG: dde:Dde_0788 TPR repeat-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
 
 0.803
DvMF_0406
PFAM: Tetratricopeptide TPR_4; KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein.
 
 
 0.799
DvMF_2846
KEGG: dde:Dde_1010 hypothetical protein.
 
     0.777
DvMF_0343
PFAM: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein.
 
  
 0.775
DvMF_2891
KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like.
  
     0.767
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.764
DvMF_2836
KEGG: dde:Dde_1022 hypothetical protein.
  
     0.763
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
 
     0.763
DvMF_0342
KEGG: dde:Dde_1995 hypothetical protein.
  
     0.757
DvMF_0919
KEGG: dde:Dde_2592 hypothetical protein.
  
     0.756
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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