Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_2050KEGG: dde:Dde_0038 hypothetical protein. (350 aa)    
Predicted Functional Partners:
DvMF_2051
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
       0.827
DvMF_1355
Hypothetical protein; KEGG: ter:Tery_2034 RTX toxins and related Ca2+-binding protein.
  
 0.753
DvMF_0371
PFAM: cell divisionFtsK/SpoIIIE; KEGG: dde:Dde_1955 FtsK/SpoIIIE family protein.
   
 
 0.744
DvMF_0689
TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: dde:Dde_0830 capsular polysaccharide transport protein.
     
 0.619
DvMF_1690
PFAM: polysaccharide export protein; KEGG: amc:MADE_03058 capsular polysaccharide transport protein, putative.
     
 0.619
DvMF_0221
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1689 OmpA family protein.
   
 0.591
DvMF_1354
PFAM: protein of unknown function DUF748; KEGG: dde:Dde_0225 hypothetical protein.
   
 0.591
DvMF_1406
PFAM: OmpA/MotB domain protein; KEGG: sat:SYN_01064 outer membrane protein.
   
 0.591
DvMF_1638
KEGG: nmu:Nmul_A1449 hypothetical protein.
   
 0.591
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 0.591
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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