Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2064KEGG: gbm:Gbem_1096 hypothetical protein. (153 aa)    
Predicted Functional Partners:
DvMF_2063
PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_1553 protein of unknown function DUF214.
 
  
 0.928
DvMF_2062
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_2109 ABC transporter related protein.
 
    0.615
DvMF_2065
TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dde:Dde_0414 hypothetical protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.473
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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