Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2097PFAM: NADPH-dependent FMN reductase; KEGG: mba:Mbar_A2580 iron-sulfur flavoprotein. (236 aa)    
Predicted Functional Partners:
DvMF_2856
PFAM: NADPH-dependent FMN reductase; KEGG: dde:Dde_0785 iron-sulfur flavoprotein, putative.
  
     0.711
DvMF_1889
KEGG: dde:Dde_3700 hypothetical protein.
   
  
 0.611
DvMF_3115
PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2413 nitroreductase family protein.
 
  
 0.596
katA
Catalase; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.494
DvMF_3004
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mla:Mlab_1007 hypothetical protein.
  
  
 0.456
DvMF_0976
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
  
 0.449
DvMF_0529
PFAM: aldo/keto reductase; KEGG: mbn:Mboo_0951 aldo/keto reductase.
 
     0.442
DvMF_0593
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
   
 0.433
DvMF_0640
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
   
 0.431
DvMF_2098
PFAM: major facilitator superfamily MFS_1; KEGG: mba:Mbar_A3306 efflux PumP antibiotic resistance protein.
       0.421
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.