STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2102PFAM: UspA domain protein; KEGG: tbd:Tbd_2614 universal stress protein. (289 aa)    
Predicted Functional Partners:
DvMF_2103
PFAM: protein of unknown function DUF81; KEGG: tbd:Tbd_2613 hypothetical protein.
   
 0.914
DvMF_2104
KEGG: tbd:Tbd_2612 hypothetical protein.
 
     0.778
DvMF_1409
PFAM: UspA domain protein; KEGG: dde:Dde_2727 universal stress protein.
  
     0.758
DvMF_1529
PFAM: UspA domain protein; KEGG: dde:Dde_0589 universal stress protein.
  
     0.742
DvMF_2105
Hypothetical protein; KEGG: tbd:Tbd_2614 universal stress protein.
       0.516
DvMF_2086
PFAM: UspA domain protein; KEGG: dde:Dde_0098 universal stress protein.
  
     0.446
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.429
DvMF_2818
TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: dde:Dde_0998 methylated-DNA--protein-cysteine methyltransferase.
  
    0.427
DvMF_1119
Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: dol:Dole_0855 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
  
 0.408
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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