STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2112PFAM: ADP-ribosylation/Crystallin J1; KEGG: dde:Dde_0059 ADP-ribosylglycohydrolase family protein. (305 aa)    
Predicted Functional Partners:
DvMF_1657
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: smd:Smed_1336 phage portal protein, HK97 family.
   
 
 0.658
DvMF_2191
KEGG: dde:Dde_0600 hypothetical protein.
  
     0.600
DvMF_0865
PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_2310 nitrogen regulatory protein P-II (GlnB, GlnK); Belongs to the P(II) protein family.
   
 
 0.567
DvMF_2614
PFAM: nitrogen regulatory protein P-II; KEGG: sfu:Sfum_1018 nitrogen regulatory protein P-II.
   
 
 0.567
DvMF_2615
PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1345 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.567
DvMF_3024
PFAM: nitrogen regulatory protein P-II; KEGG: sul:SYO3AOP1_0047 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.567
DvMF_1801
TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: dde:Dde_3224 phage shock protein C, PspC.
  
     0.538
DvMF_2186
PFAM: Dual specificity protein phosphatase; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase.
 
     0.517
DvMF_2732
PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein.
  
     0.500
DvMF_2733
PFAM: von Willebrand factor type A; KEGG: dde:Dde_2368 von Willebrand factor, type A.
  
     0.447
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.