STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2119KEGG: dde:Dde_3774 hypothetical protein. (222 aa)    
Predicted Functional Partners:
DvMF_2118
KEGG: dde:Dde_3773 hypothetical protein.
 
     0.953
DvMF_2117
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3772 TPR repeat-containing protein.
 
     0.920
DvMF_1555
PFAM: Dissimilatory sulfite reductase D; KEGG: dde:Dde_0528 dissimilatory sulfite reductase B.
 
     0.786
DvMF_2834
KEGG: dde:Dde_1143 hypothetical protein.
  
     0.765
DvMF_2687
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative.
  
     0.737
DvMF_2554
KEGG: dde:Dde_3710 acidic cytochrome c3.
  
     0.732
DvMF_2594
KEGG: dde:Dde_0649 hmc operon protein 5.
  
     0.665
DvMF_0580
KEGG: dde:Dde_2617 hypothetical protein.
  
     0.656
DvMF_2556
KEGG: dde:Dde_3708 hypothetical protein.
  
     0.652
DvMF_2141
PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase.
  
     0.638
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.