STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2123TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: dde:Dde_3474 chromosome replication initiation inhibitor protein. (320 aa)    
Predicted Functional Partners:
DvMF_2124
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dde:Dde_3475 L-lysine exporter, putative.
 
   
 0.896
DvMF_2241
TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: bcm:Bcenmc03_2357 benzoate transporter.
  
     0.540
DvMF_2389
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.526
DvMF_3146
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1423 putative polar amino acid transport system substrate-binding proetin.
  
   
 0.513
DvMF_1101
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0241 extracellular solute-binding protein.
  
   
 0.502
DvMF_1185
PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein.
  
   
 0.465
DvMF_0387
PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_06937 amino acid ABC transporter periplasmic protein.
  
   
 0.456
DvMF_1179
PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein.
  
   
 0.419
DvMF_1176
PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein.
  
   
 0.417
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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