Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DvMF_2141PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase. (709 aa)    
Predicted Functional Partners:
DvMF_2690
KEGG: dde:Dde_2932 hypothetical protein.
  
 
   0.684
DvMF_2119
KEGG: dde:Dde_3774 hypothetical protein.
  
     0.638
DvMF_2118
KEGG: dde:Dde_3773 hypothetical protein.
  
     0.630
DvMF_1313
KEGG: dde:Dde_3758 hypothetical protein.
  
  
 0.587
DvMF_1835
KEGG: sgr:SGR_4544 putative methyltransferase.
  
  
 0.587
DvMF_1855
KEGG: dde:Dde_0428 glycosyltransferase-like protein.
  
  
 0.587
DvMF_2834
KEGG: dde:Dde_1143 hypothetical protein.
  
     0.558
DvMF_2079
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: dde:Dde_0236 hypothetical protein.
   
 
 0.554
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
 
 
 0.553
DvMF_2687
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative.
  
     0.535
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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