STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2141PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase. (709 aa)    
Predicted Functional Partners:
DvMF_2119
KEGG: dde:Dde_3774 hypothetical protein.
  
     0.638
DvMF_2118
KEGG: dde:Dde_3773 hypothetical protein.
  
     0.630
DvMF_1313
KEGG: dde:Dde_3758 hypothetical protein.
  
  
 0.617
DvMF_1835
KEGG: sgr:SGR_4544 putative methyltransferase.
  
  
 0.617
DvMF_1855
KEGG: dde:Dde_0428 glycosyltransferase-like protein.
  
  
 0.617
DvMF_2834
KEGG: dde:Dde_1143 hypothetical protein.
  
     0.558
DvMF_2687
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative.
  
     0.535
DvMF_1945
KEGG: dde:Dde_0171 L-threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
  
     0.528
DvMF_2690
KEGG: dde:Dde_2932 hypothetical protein.
  
     0.463
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.457
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.