STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2145PFAM: Protein of unknown function DUF1778; KEGG: neu:NE1104 hypothetical protein. (90 aa)    
Predicted Functional Partners:
DvMF_2144
PFAM: GCN5-related N-acetyltransferase; KEGG: mbb:BCG_0971 hypothetical protein.
 
 
 
 0.980
DvMF_1487
PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VF1120 acetyltransferase.
   
   0.669
DvMF_1776
PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: dde:Dde_3208 acetyltransferase.
   
 
 0.645
DvMF_0006
Hypothetical protein; KEGG: shw:Sputw3181_0818 GCN5-related N-acetyltransferase.
   
 
 0.643
DvMF_0347
TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_1990 SSU ribosomal protein S18P alanine acetyltransferase.
   
 
 0.643
DvMF_0607
PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_3727 acetyltransferase, GNAT family.
   
 
 0.643
DvMF_1704
PFAM: GCN5-related N-acetyltransferase; KEGG: cak:Caul_3208 GCN5-related N-acetyltransferase.
   
 
 0.643
DvMF_2800
Hypothetical protein; KEGG: lpc:LPC_0907 putative mitomycin resistance protein McrB.
   
 
 0.643
DvMF_2146
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
       0.400
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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