STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2155PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter. (435 aa)    
Predicted Functional Partners:
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
 
 
0.965
DvMF_2157
PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_3037 secretion protein HlyD.
 
  
 0.960
DvMF_0428
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1770 ATPase.
   
 0.851
DvMF_0696
PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0825 hypothetical protein.
 
  
 0.707
DvMF_0004
PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2348 hypothetical protein.
  
  
 0.689
DvMF_2158
PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: pfl:PFL_5951 TetR family transcriptional regulator.
 
   
 0.641
DvMF_0695
TIGRFAM: CAAX prenyl protease-related protein; PFAM: Abortive infection protein; KEGG: dde:Dde_0824 CAAX amino terminal protease family protein.
  
  
 0.631
DvMF_3115
PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2413 nitroreductase family protein.
  
  
 0.619
DvMF_0655
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: lip:LI0076 sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
 0.617
DvMF_1589
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pmu:PM1454 MsmK; Belongs to the ABC transporter superfamily.
 
   
  0.607
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.