Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2155PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter. (435 aa)    
Predicted Functional Partners:
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
 
 
0.984
DvMF_2157
PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_3037 secretion protein HlyD.
 
  
 0.965
DvMF_0428
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1770 ATPase.
   
  0.955
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
  
 
  0.847
DvMF_0117
PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein.
    
  0.822
DvMF_0375
PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease, putative.
     
 0.819
DvMF_0376
PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative.
     
 0.819
DvMF_0655
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: lip:LI0076 sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
 0.814
DvMF_1589
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pmu:PM1454 MsmK; Belongs to the ABC transporter superfamily.
 
 
 
  0.814
DvMF_3138
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dde:Dde_1192 cobalt ABC transporter, permease protein, putative.
    
  0.813
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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