STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2156PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related. (1106 aa)    
Predicted Functional Partners:
DvMF_2155
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter.
 
 
0.984
DvMF_2157
PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_3037 secretion protein HlyD.
 
  
 0.968
msbA
ABC transporter related; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 0.962
DvMF_2110
KEGG: dde:Dde_3778 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 
 0.911
DvMF_0657
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transport system.
  
 
 0.906
DvMF_0167
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gbm:Gbem_1735 twin-arginine translocation pathway signal; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.905
DvMF_0656
PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 probable extracellular solute-binding protein.
   
 
 0.899
DvMF_2701
PFAM: ABC-2 type transporter; KEGG: dde:Dde_2896 ABC transporter permease.
    
 0.899
DvMF_1608
Histidine kinase; PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: gme:Gmet_2788 histidine kinase.
  
 
 0.895
DvMF_3138
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dde:Dde_1192 cobalt ABC transporter, permease protein, putative.
    
 0.891
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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