Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2192PFAM: protein of unknown function DUF81; KEGG: dde:Dde_0598 hypothetical protein. (380 aa)    
Predicted Functional Partners:
DvMF_2191
KEGG: dde:Dde_0600 hypothetical protein.
 
     0.906
DvMF_1985
KEGG: sfu:Sfum_0645 hypothetical protein.
 
   
 0.646
DvMF_1984
PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0644 protein of unknown function DUF81.
  
     0.597
DvMF_2777
KEGG: dde:Dde_2827 hypothetical protein.
  
   
 0.583
DvMF_2189
KEGG: dde:Dde_0602 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.563
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
  
     0.561
DvMF_2190
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dde:Dde_0601 phosphonate-binding periplasmic protein.
 
   
 0.556
DvMF_2193
PFAM: protein of unknown function DUF169; KEGG: dde:Dde_0597 hypothetical protein.
       0.547
DvMF_2892
TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1109 adenylylsulfate reductase subunit beta.
  
   
 0.530
DvMF_2186
PFAM: Dual specificity protein phosphatase; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase.
 
     0.526
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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