Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
DvMF_2196PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: dde:Dde_3604 oxidoreductase. (942 aa)    
Predicted Functional Partners:
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
   
 0.964
DvMF_0965
KEGG: dde:Dde_1032 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: HpcH/HpaI aldolase; Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.
  
 0.922
DvMF_1567
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_0182 D-lactate dehydrogenase (cytochrome).
 
 
0.922
DvMF_0184
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1792 pyruvate ferredoxin oxidoreductase, alpha subunit.
    
 0.921
DvMF_1539
PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: dde:Dde_1253 malate dehydrogenase.
  
 
 0.920
DvMF_1997
KEGG: mta:Moth_1926 hypothetical protein.
    
 0.914
DvMF_2853
PFAM: beta-lactamase domain protein; KEGG: dde:Dde_0786 metallo-beta-lactamase family protein.
    
 0.914
DvMF_0416
PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase.
    
 0.913
DvMF_0705
Pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0630 pyruvate, water dikinase.
    
 0.913
DvMF_0707
PFAM: PEP-utilising protein mobile region; KEGG: sfu:Sfum_2666 pyruvate, water dikinase.
    
 0.913
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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