era protein (Desulfovibrio vulgaris Miyazaki)

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era

GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. (307 aa)

Predicted Functional Partners:

rpsP

0.912

rpsG

0.900

rpsI

0.898

rpsF

0.891

rpsO

0.888

rpsJ

0.885

rpsE

0.884

rpsZ

0.882

rpsL

0.879

rpsB

0.874

Your Current Organism:

Desulfovibrio vulgaris Miyazaki

NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'

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structured XML interaction data, according to the 'PSI-MI' data standard

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... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
era	rpsB	DvMF_2207	DvMF_2924	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.874
era	rpsE	DvMF_2207	DvMF_0096	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.884
era	rpsF	DvMF_2207	DvMF_1350	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.891
era	rpsG	DvMF_2207	DvMF_0076	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.900
era	rpsI	DvMF_2207	DvMF_0970	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	PFAM: ribosomal protein S9; KEGG: dde:Dde_2608 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.898
era	rpsJ	DvMF_2207	DvMF_0078	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.885
era	rpsL	DvMF_2207	DvMF_0075	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.879
era	rpsO	DvMF_2207	DvMF_2509	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.888
era	rpsP	DvMF_2207	DvMF_2887	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	PFAM: ribosomal protein S16; KEGG: dde:Dde_1099 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.912
era	rpsZ	DvMF_2207	DvMF_0092	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.882
rpsB	era	DvMF_2924	DvMF_2207	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	0.874
rpsB	rpsE	DvMF_2924	DvMF_0096	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.998
rpsB	rpsF	DvMF_2924	DvMF_1350	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.998
rpsB	rpsG	DvMF_2924	DvMF_0076	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
rpsB	rpsI	DvMF_2924	DvMF_0970	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	PFAM: ribosomal protein S9; KEGG: dde:Dde_2608 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.998
rpsB	rpsJ	DvMF_2924	DvMF_0078	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998
rpsB	rpsL	DvMF_2924	DvMF_0075	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.998
rpsB	rpsO	DvMF_2924	DvMF_2509	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.997
rpsB	rpsP	DvMF_2924	DvMF_2887	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	PFAM: ribosomal protein S16; KEGG: dde:Dde_1099 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.997
rpsB	rpsZ	DvMF_2924	DvMF_0092	PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.997

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