Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2222PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0411 hypothetical protein. (935 aa)    
Predicted Functional Partners:
DvMF_2221
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0412 ATPase.
 
  
 0.964
DvMF_2220
PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_0413 putative acyl-CoA thioesterase precursor.
 
 
   0.945
DvMF_0267
PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_2141 GDSL family lipase.
 
 
   0.894
DvMF_1630
PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease protein, putative.
  
 
  0.772
DvMF_2953
PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1335 ABC transporter, permease protein.
  
 
  0.732
DvMF_2954
PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transport system, permease component.
  
 
  0.732
DvMF_0038
PFAM: protein of unknown function DUF140; KEGG: sat:SYN_02070 ABC transporter permease protein.
   
 
 0.596
DvMF_0852
PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein.
   
 
 0.596
DvMF_1505
PFAM: protein of unknown function DUF140; KEGG: pla:Plav_2512 protein of unknown function DUF140.
   
 
 0.596
DvMF_1592
KEGG: ret:RHE_CH02651 hypothetical protein.
   
   0.466
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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